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index.html
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<!doctype html>
<html lang="en">
<head>
<title>eFP-Seq Browser</title>
<meta http-equiv="Content-Type" content="text/html" charset="UTF-8" />
<meta name="title" content="eFP-Seq Browser" />
<link rel="icon" href="https://bar.utoronto.ca/icon/favicon.ico" />
<link rel="shortcut icon" href="https://bar.utoronto.ca/icon/favicon.ico" type="image/x-icon" />
<link rel="canonical" href="https://bar.utoronto.ca/eFP-Seq_Browser/" />
<meta http-equiv="Cache-Control" content="max-age=604800" />
<!-- Metadata -->
<meta name="viewport" content="width=device-width, initial-scale=1" />
<meta name="theme-color" content="#cddaa7" />
<meta
name="author"
content="BAR Lab @ University of Toronto: Alexander Sullivan, Priyank K. Purohit, Nowlan H. Freese, Asher Pasha, Eddi Esteban, Jamie Waese, Alison Wu, Michelle Chen, Chih Y. Chin, Richard Song, Sneha R. Watharkar, Agnes P. Chan, Vivek Krishnakumar, Matthew W. Vaughn, Chris Town, Ann E. Loraine, Nicholas J. Provart"
/>
<meta
name="description"
content="Search among 113 RNA-seq data sets used by Araport 11 to reannotate the Arabidopsis genome, retrieving the number of reads mapped and display above the desired gene model"
/>
<meta
name="keywords"
content="bioinformatic, computational, bioinformatics, rna, rna-seq, efp-seq browser, efp, browser, data, data visualization, visualization, plant, biology, arabidopsis, arabidopsis thaliana, a thaliana, provart, rna-seq mapping, mapping, webapp, web, application, bam, alternative, splicing, database"
/>
<meta name="robots" content="index, follow" />
<meta name="language" content="English" />
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<!-- Open Graph -->
<meta property="og:type" content="website" />
<meta property="og:url" content="https://bar.utoronto.ca/eFP-Seq_Browser/" />
<meta property="og:title" content="eFP-Seq Browser" />
<meta
property="og:description"
content="An RNA-Seq data exploration tool that shows read map coverage of a gene along with a coloured eFP image."
/>
<meta property="og:image" content="https://bar.utoronto.ca/eFP-Seq_Browser/cgi-bin/icon/resoc.png" />
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<meta property="og:image:alt" content="eFP-Seq Browser" />
<meta property="og:site_name" content="https://bar.utoronto.ca/eFP-Seq_Browser/" />
<meta property="article:modified_time" name="article-modified_time" content="2022-05-02T12:00:00+00:00" />
<meta itemprop="name" content="eFP-Seq Browser" />
<meta itemprop="url" content="https://bar.utoronto.ca/eFP-Seq_Browser/" />
<meta itemprop="description" content="eFP-Seq Browser" />
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<!-- Twitter -->
<meta property="twitter:card" content="summary_large_image" />
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<meta property="twitter:title" content="eFP-Seq Browser" />
<meta
property="twitter:description"
content="An RNA-Seq data exploration tool that shows read map coverage of a gene along with a coloured eFP image."
/>
<meta property="twitter:image" content="https://bar.utoronto.ca/eFP-Seq_Browser/icon/resoc.png" />
<meta name="twitter:site" content="@BAR_PlantBio" />
<meta name="twitter:title" content="eFP-Seq Browser" />
<meta name="twitter:image" content="https://bar.utoronto.ca/eFP-Seq_Browser/icon/resoc.png" />
<meta name="twitter:url" content="https://twitter.com/BAR_PlantBio" />
<meta name="twitter:creator" content="@BAR_PlantBio" />
<meta name="twitter:domain" content="bar.utoronto.ca" />
<meta
name="twitter:description"
content="An RNA-Seq data exploration tool that shows read map coverage of a gene along with a coloured eFP image."
/>
<!-- Schema/Structured Data -->
<script type="application/ld+json">
{
"url": "https://bar.utoronto.ca/eFP-Seq_Browser/",
"name": "eFP-Seq Browser",
"description": "An RNA-Seq data exploration tool that shows read map coverage of a gene along with a coloured eFP image",
"image": "https://bar.utoronto.ca/eFP-Seq_Browser/cgi-bin/icon/resoc.png",
"@context": "http://schema.org",
"@type": "WebSite"
}
</script>
<!-- END META DATA -->
<!-- LIBRARIES AND PACKAGES -->
<!-- jQuery -->
<script rel="preload" as="script" src="cgi-bin/core/packages/jQuery/jquery.min.js"></script>
<!-- END jQuery -->
<!-- Google APIs-->
<link href="https://fonts.googleapis.com/icon?family=Material+Icons&display=swap" rel="stylesheet" />
<link
rel="stylesheet preload"
href="cgi-bin/core/packages/GoogleMaterial/material.green-pink.min.css"
as="style"
/>
<script async rel="preload" as="script" src="cgi-bin/core/packages/GoogleMaterial/material.min.js"></script>
<!-- END Google APIs-->
<!-- Global site tag (gtag.js) - Google Analytics -->
<script async rel="preconnect" src="https://www.googletagmanager.com/gtag/js?id=G-RB9VJGE97E"></script>
<script>
window.dataLayer = window.dataLayer || [];
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dataLayer.push(arguments);
}
gtag("js", new Date());
gtag("config", "G-RB9VJGE97E");
</script>
<!-- End Global site tag (gtag.js) - Google Analytics -->
<!-- Google Tag Manager -->
<script>
(function (w, d, s, l, i) {
w[l] = w[l] || [];
w[l].push({ "gtm.start": new Date().getTime(), event: "gtm.js" });
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f.parentNode.insertBefore(j, f);
})(window, document, "script", "dataLayer", "GTM-PDZGM64");
</script>
<!-- End Google Tag Manager -->
<!-- Google Identity login -->
<script src="https://accounts.google.com/gsi/client" async defer></script>
<!-- End Google Identity login -->
<!-- jQuery UI -->
<link rel="stylesheet preload" href="cgi-bin/core/packages/jQuery-ui/jquery-ui.min.css" as="style" />
<script async rel="preload" as="script" src="cgi-bin/core/packages/jQuery-ui/jquery-ui.min.js"></script>
<!-- END jQuery UI -->
<!-- Bootstrap -->
<link rel="stylesheet preload" href="cgi-bin/core/packages/boostrap/css/bootstrap.min.css" as="style" />
<script async rel="preload" as="script" src="cgi-bin/core/packages/boostrap/js/bootstrap.min.js"></script>
<!-- END Bootstrap -->
<!-- Main stylesheet -->
<link rel="stylesheet preload" href="cgi-bin/core/style.min.css" as="style" />
<!-- END Main stylesheet -->
<!-- END LIBRARIES AND PACKAGES -->
</head>
<body id="bodyContainer" style="overflow: hidden !important; position: relative; max-height: 100vh">
<!-- Google Tag Manager (noscript) -->
<noscript
><iframe
src="https://www.googletagmanager.com/ns.html?id=GTM-PDZGM64"
height="0"
width="0"
style="display: none; visibility: hidden"
title="Google Tag Manager's iFrame"
></iframe
></noscript>
<!-- End Google Tag Manager (noscript) -->
<div id="testing_count" hidden="hidden">count</div>
<!-- Pre-body requirements -->
<div id="loading_requirement">
<div class="done_loading" id="loading_screen"></div>
</div>
<!-- Progress bar -->
<div
class="progress"
style="width: 100%; height: 5px; position: fixed; margin-top: 0px; top: 0px; z-index: 100"
id="progress_requirement"
hidden
>
<div
id="progress"
class="progress-bar progress-bar-success"
role="progressbar"
aria-valuenow="1"
aria-valuemin="0"
aria-valuemax="113"
style="width: 1%"
></div>
</div>
<div id="progress_tooltip" class="mdl-tooltip" for="title_bar">Typical load time less than 10 mins.</div>
<!-- Failure warning regarding retrieving gene information -->
<div id="failure" class="alert alert-danger alert-dismissible" role="alert" style="display: none">
<button type="button" class="close" style="margin-top: -5px" data-dismiss="alert" aria-label="Close">
<span aria-hidden="true">×</span>
</button>
<strong>Data Request Failure!</strong> At least one data request failed, trying again typically fixes these
issues. Contact us with specific details if the problem persists.
</div>
<!-- Primary displayed content -->
<div id="mainContainer" class="container-fluid" role="main">
<div class="row" id="mainRow">
<!-- Navigation menu-->
<div class="col-3 navbar_menu" id="navbar_menu">
<!-- Title -->
<div id="nm_title" style="margin-bottom: 5%; margin-top: 2.5%">
<div class="row">
<!-- Toggle menu button -->
<div class="col-1" id="nm_menu_icon">
<em
class="material-icons"
style="color: white; cursor: pointer"
onclick="displayNavBAR();"
>menu</em
>
</div>
<!-- Back to BAR homepage -->
<div class="col-2" id="nm_title_img">
<a href="https://bar.utoronto.ca/">
<img loading="lazy" src="cgi-bin/img/BAR-logo.svg" style="height: 5em" alt="BAR" />
</a>
</div>
<!-- Title text -->
<div
class="col-8"
id="nm_title_words"
style="margin: auto; display: inline-block; vertical-align: middle"
>
<a id="hrefTitle" href="./" style="text-decoration: none"
><p class="navbar_menu_title">eFP-Seq Browser</p></a
>
</div>
</div>
</div>
<!-- Required 4 inputs for visualizing information -->
<div id="nm_selection">
<!-- Locus input -->
<div id="locusBrowser" class="form-group navbar_menu_form_group">
<p class="navbar_menu_general_font">1) Enter a gene name or AGI ID</p>
<input
type="text"
class="form-control navbar_menu_clickable navbar_menu_input disableOnLoading"
name="Locus"
id="locus"
value="AT2G24270"
onkeypress="IfPressEnter(event, 'locus_button')"
aria-label="Gene/Locus search"
autofocus
/>
</div>
<div class="mdl-tooltip" for="locusBrowser">Locus example: AT2G24270</div>
<!-- Dataset selection -->
<div id="publicDatabase" class="form-group navbar_menu_form_group">
<p class="navbar_menu_general_font">2) Select a dataset</p>
<select
class="xmlDatabase form-control navbar_menu_clickable navbar_menu_input disableOnLoading"
id="xmlDatabase"
name="xmlDatabase"
style="height: 34px"
type="text"
data-help-text="xmlDatabase"
onclick="check_if_Google_login()"
onchange="changePublicData()"
aria-label="Dataset selection"
title="Dataset selection"
>
<option value="-- eFP-Seq Browser public database options --" disabled>
-- eFP-Seq Browser Public Database Options --
</option>
<option value="Araport 11 RNA-seq data" tag="preload">Araport 11 RNA-seq data</option>
<option value="Developmental transcriptome - Klepikova et al" tag="preload">
Developmental transcriptome - Klepikova et al
</option>
<option value="Guard Cell Drought" tag="preload">Guard Cell Drought</option>
<option value="Pollen" tag="preload">Pollen</option>
<option
value="-- Uploaded dataset --"
id="uploaded_dataset_header"
disabled
style="display: none"
>
-- Uploaded dataset --
</option>
<option
value="Uploaded dataset"
id="uploaded_dataset"
style="display: none"
tag="private"
>
Uploaded dataset
</option>
<option
value="-- Private database options --"
id="private_dataset_header"
disabled
style="display: none"
>
-- Private database options --
</option>
<option
value="-- Community submitted dataset --"
id="community_dataset_header"
disabled
style="display: none"
>
-- Community submitted dataset --
</option>
</select>
<div id="hold-xml"></div>
</div>
<div class="mdl-tooltip" for="publicDatabase">
Load publicly available datasets/XMLs that can be visualized by the eFP-Seq Browser. Login
with Google to access your previously submitted databases.
</div>
<!-- Abs/Rel radio and scale/max -->
<div id="options_portion" class="navbar_menu_form_group">
<p class="navbar_menu_general_font">3) Select options</p>
<!-- Abs/Rel Radio -->
<div
id="default_radio"
class="btn-group select-radio d-flex"
data-toggle="buttons"
style="padding-bottom: 5%"
>
<label
id="abs_radio"
class="btn navbar_menu_buttons navbar_radio_buttons btn-secondary active disableOnLoading"
style="font-size: 1.5em"
data-value="abs"
onClick="switchRPKMMode(this.id)"
>
Absolute
</label>
<label
id="rel_radio"
class="btn navbar_menu_buttons navbar_radio_buttons btn-secondary disableOnLoading"
style="font-size: 1.5em"
data-value="rel"
onClick="switchRPKMMode(this.id)"
>
Relative
</label>
</div>
<div class="mdl-tooltip" for="default_radio">
This controls the SVG colouring mode. Absolute is based on the RPKM values while
relative is based on the Log2 of the RPKM to average of the RPKM of the corresponding
controls.
</div>
<!-- Scale and value -->
<div id="scale_and_value" style="margin-bottom: 2%">
<div class="row">
<div class="col-5 navbar_menu_center" id="tt4">
<p
class="navbar_menu_general_font"
style="text-align: center; font-size: 1.25em"
>
Y-axis Scale
</p>
<input
type="text"
class="form-control navbar_menu_clickable navbar_menu_input disableOnLoading"
name="yscale_inp"
id="yscale_input"
onkeypress="IfPressEnter(event, 'locus_button')"
value="Auto"
aria-label="RNA-Seq Y-axis Scale. 'Auto' or >= 1"
/>
</div>
<div class="mdl-tooltip" for="tt4">RNA-Seq Y-axis Scale. 'Auto' or >= 1</div>
<div class="col-5 navbar_menu_center" id="absolutedefault">
<p
class="navbar_menu_general_font"
style="text-align: center; font-size: 1.25em"
>
Absolute Max
</p>
<input
type="text"
class="form-control navbar_menu_clickable navbar_menu_input disableOnLoading"
onkeyup="colour_svgs_now();"
name="rpkm_inp"
id="rpkm_scale_input"
value="1000"
aria-label="Absolute Max"
/>
</div>
<div class="mdl-tooltip" for="absolutedefault">
Automatically set to the highest value
</div>
</div>
</div>
</div>
<!-- Load data button -->
<div id="locusButton" class="navbar_menu_form_group">
<p class="navbar_menu_general_font">4) Load your dataset</p>
<button
id="locus_button"
onclick="change_dataset(); determineResponsiveTable()"
class="btn navbar_menu_loadData btn-block navbar_menu_clickable disableOnLoading"
>
LOAD DATA
</button>
</div>
</div>
<div class="mdl-tooltip" for="locusButton">Load new settings.</div>
<!-- Addition features -->
<div id="nm_Additional">
<p class="navbar_menu_general_font" style="padding-top: 3%">Additional Features</p>
<!-- eFP Overview -->
<div id="eFP_button">
<button
id="eFPOverview_open"
type="button"
class="btn navbar_menu_buttons btn-block navbar_menu_clickable disableOnLoading"
data-toggle="modal"
data-target="#eFPModal"
onclick="populate_efp_modal(1); $('#eFPModal').modal('toggle');"
disabled
>
eFP Overview
</button>
</div>
<div class="mdl-tooltip" for="eFPOverview_open">See all the eFP tissue levels in one table</div>
<!-- Download the table as a CSV/Excel -->
<div id="download_button">
<button
id="download_icon"
type="button"
class="btn navbar_menu_buttons btn-block navbar_menu_clickable disableOnLoading"
onclick="download_mainTableCSV();"
disabled
>
Download table as CSV
</button>
</div>
<div class="mdl-tooltip" for="download_icon">
Download the currently displayed dataset as a CSV (Excel) file
</div>
<!-- Download the table as an image -->
<div id="download_tableAsImage">
<button
id="download_tableDiv"
type="button"
class="btn navbar_menu_buttons btn-block navbar_menu_clickable disableOnLoading"
onclick="downloadDiv('theTable')"
disabled
>
Download table as image
</button>
</div>
<div class="mdl-tooltip" for="download_icon">
Download the currently displayed dataset as an image
</div>
<!-- Compare gene variants of the table -->
<div id="compareGeneVariantsContainer">
<button
id="compareGeneVariants"
type="button"
class="btn navbar_menu_buttons btn-block navbar_menu_clickable"
data-toggle="modal"
data-target="#CompareGeneVariants"
onClick="$('#CompareGeneVariants').modal('toggle');"
disabled
>
Compare gene variants
</button>
</div>
<div class="mdl-tooltip" for="download_icon">
Compare selected samples against all of it's gene variants
</div>
<!-- Generate a share link -->
<div id="share_button">
<button
id="generateShareLink"
type="button"
class="btn navbar_menu_buttons btn-block navbar_menu_clickable disableOnLoading"
onclick="generateShareLink(); $('#ShareLinkModal').modal('toggle');"
data-toggle="modal"
data-target="#ShareLinkModal"
disabled
>
Generate Share Link
</button>
</div>
<div class="mdl-tooltip" for="generateShareLink">Generate a link to share loaded data</div>
<!-- Generate own data/submission page -->
<div id="generate_button">
<button
id="generateData"
type="button"
class="btn navbar_menu_buttons btn-block navbar_menu_clickable disableOnLoading"
onclick="get_user_XML_display(); $('#SubmissionModal').modal('toggle');"
data-toggle="modal"
data-target="#SubmissionModal"
>
Generate Data
</button>
</div>
<div class="mdl-tooltip" for="generateData">
Generate an XML config file to view your own BAM files
</div>
<!-- Upload XML/data -->
<div id="uploadData_button">
<button
id="upload_button"
type="button"
class="btn navbar_menu_buttons btn-block spacerBottom navbar_menu_clickable disableOnLoading"
onclick="which_upload_option(); uploadingData = true; $('#uploadModal').modal('toggle');"
>
Upload Data
</button>
<!-- Hidden buttons to open either upload to private database if logged in (upload_modal) or if not logged in, just upload directly (upload_logX) -->
<button id="upload_modal" data-toggle="modal" data-target="#uploadModal" hidden></button>
<button
id="upload_logX"
onclick="document.getElementById('fileID').click(); emptyLanding();"
hidden
></button>
<input
type="file"
id="fileID"
hidden
accept="text/xml"
aria-label="Ignore - Meant to XML processing"
/>
</div>
<div class="mdl-tooltip" for="upload_button">
Upload your generated data (as XML format) to be visualized in the eFP-Seq Browser
</div>
<!-- Manage account -->
<div id="manageAccount_button" style="display: none">
<button
id="manageXMLs"
type="button"
class="btn navbar_menu_buttons btn-block navbar_menu_clickable disableOnLoading"
onclick="$('#logoutModal').modal('toggle'); delete_fill(); fill_tableCSV(); hideWarning_index();"
data-toggle="modal"
data-target="#logoutModal"
>
Manage Account
</button>
</div>
<div class="mdl-tooltip" for="manageXMLs">
Manage files and data associated with your account
</div>
</div>
<!-- Footer of navbar -->
<div id="nm_footer" class="navbar_menu_footer_overflow_sticky row">
<!-- Help button -->
<div class="col-6" id="help">
<p class="navbar_menu_footer_help" style="text-align: center; margin: auto !important">
<a
data-toggle="modal"
data-target="#myModal"
onClick="$('#myModal').modal('toggle');"
id="help_button"
style="cursor: help"
>Help</a
>
</p>
</div>
<!-- Sign in/out using Google -->
<div class="col-6">
<div class="container-fluid" style="padding-left: 0px; margin-left: -5px; margin-top: -5px">
<div
data-auto_select="false"
data-callback="onSignIn"
data-client_id="505765553389-ckpd42b8ub1u66gd1fegt585ta48tkkh.apps.googleusercontent.com"
data-context="signin"
data-itp_support="true"
data-text="signin"
data-use_fedcm_for_prompt="true"
data-ux_mode="popup"
id="g_id_onload"
></div>
<div
class="g_id_signin"
data-auto_select="false"
data-logo_alignment="left"
data-shape="rectangular"
data-size="large"
data-text="signin"
data-theme="outline"
data-type="standard"
id="g_id_signin"
></div>
<div id="custom_g_signed_in" class="custom_g_signed_in" hidden>
<button
class="btn btn-block custom_g_signed_in_button"
id="signOut"
onclick="signOut();"
>
<img
alt=""
class="custom_g_signed_in_profile_pic"
id="signed_in_profile_pic"
src=""
style="width: 30px; height: 30px; border-radius: 50%; margin-right: 5px"
/>
<span id="signOut_text" class="custom_g_signed_in_text">Sign Out</span>
</button>
</div>
</div>
</div>
</div>
</div>
<!-- Displayed information -->
<div class="col-9" style="overflow-y: auto; height: 100vh; padding: 1px !important" id="main_content">
<div id="displayError"></div>
<!-- Landing page -->
<div id="landing" style="background-color: white">
<div id="landing_body" style="padding: 3%">
<h1 style="text-align: center; padding-top: 3%">
Welcome to the <em>Arabidopsis thaliana</em> eFP-Seq Browser
</h1>
<p style="text-align: justify; font-family: Arial">
The eFP-Seq Browser allows you to explore RNA-seq-based gene expression levels for your
gene of interest in different expression datasets. Simply enter your gene identifier in
the first box on the left, select a dataset, adjust the options if desired, and click
Load Data. The output is a table depicting your gene's expression details (readmap
coverage, RPKM expression levels) across all the samples in the database. Try it with
the default settings!
</p>
<img
fetchpriority="high"
loading="auto"
id="landingPage_image"
src="cgi-bin/img/landingPage.webp"
alt="Welcome to the eFP-Seq Browser!"
style="max-width: 90%; height: auto; display: block; margin: auto; width: 90%"
/>
<br />
<p style="text-align: justify; font-family: Arial">
Developed by Alexander Sullivan, Priyank K. Purohit, Nowlan H. Freese, Asher Pasha, Eddi
Esteban, Jamie Waese, Alison Wu, Michelle Chen, Chih Y. Chin, Richard Song, Sneha R.
Watharkar, Agnes P. Chan, Vivek Krishnakumar, Matthew W. Vaughn, Chris Town, Ann E.
Loraine, Nicholas J. Provart at the University of Toronto.
</p>
</div>
</div>
<!-- RNA-Seq table -->
<div class="col-12 table-responsive body_of_loading_done" id="body_of" hidden></div>
<!-- Back to top -->
<a
class="backToTop"
onclick="returnBackToTop()"
id="backToTop"
title="Return To Top"
style="display: none"
>
<em
class="material-icons"
style="-webkit-transform: scaleY(-1); transform: scaleY(-1); color: black"
>arrow_drop_down_circle</em
>
</a>
<div class="dropdown"></div>
<!-- Toggle table columns -->
<div class="btn-group dropup">
<a
class="tableToggle"
data-toggle="dropdown"
aria-haspopup="true"
aria-expanded="false"
id="tableToggle"
title="Toggle on/off columns in RNA-table"
style="display: none"
onClick="setTimeout(function() {adjustTableOptionsDropdownSize()}, 50); toggleOptionsTable()"
>
<em
class="material-icons"
style="-webkit-transform: scaleY(-1); transform: scaleY(-1); color: black"
>settings</em
>
</a>
<ul id="filterDropdown" class="dropdown-menu" style="font-size: 12px; min-width: 280px">
<div class="card text-center">
<div class="card-header">
<ul class="nav nav-tabs card-header-tabs">
<li class="nav-item">
<a
class="nav-link active"
id="tableFilter-tab"
data-toggle="tab"
href="#tableFilter"
role="tab"
aria-controls="tableFilter"
aria-selected="true"
onclick="toggleTableOptionsView();"
>Filter Table</a
>
</li>
<li class="nav-item">
<a
class="nav-link"
id="eFPFilter-tab"
data-toggle="tab"
href="#eFPFilter"
role="tab"
aria-controls="eFPFilter"
aria-selected="false"
onclick="toggleTableOptionsView();"
>Filter eFP Images</a
>
</li>
</ul>
</div>
<div class="tab-content" id="tableFilterTabContent">
<!-- Filter table content -->
<div
class="tab-pane fade show active PnCPolicy"
id="tableFilter"
role="tabpanel"
aria-labelledby="tableFilter-tab"
>
<li class="form-check">
<input
class="form-check-input"
type="checkbox"
id="toggleTitle"
onclick="toggleTableCol('colTitle', document.getElementById('toggleTitle').checked); RememberToggleOptions(document.getElementById('toggleTitle').checked, ToggledTable[1], ToggledTable[2], ToggledTable[3], ToggledTable[4], ToggledTable[5], ToggledTable[6]); usedToggle = true;"
style="margin: 6px 5px 0"
value="toggleTitle"
aria-label="Toggle title for filtering"
checked
/>
<p
class="form-check-label"
for="toggleTitle"
style="padding-left: 20px; font-weight: 10"
>
Toggle Title
</p>
</li>
<li class="form-check">
<input
class="form-check-input"
type="checkbox"
id="toggleRNA"
onclick="toggleTableCol('colRNA', document.getElementById('toggleRNA').checked); RememberToggleOptions(ToggledTable[0], document.getElementById('toggleRNA').checked, ToggledTable[2], ToggledTable[3], ToggledTable[4], ToggledTable[5], ToggledTable[6]); usedToggle = true;"
style="margin: 6px 5px 0"
value="toggleRNA"
aria-label="Toggle RNA-Seq coverage map for filtering"
checked
/>
<p
class="form-check-label"
for="toggleRNA"
style="padding-left: 20px; font-weight: 10"
>
Toggle RNA-Seq Coverage
</p>
</li>
<li class="form-check">
<input
class="form-check-input"
type="checkbox"
id="togglerpb"
onclick="toggleTableCol('colrpb', document.getElementById('togglerpb').checked); RememberToggleOptions(ToggledTable[0], ToggledTable[1], document.getElementById('togglerpb').checked, ToggledTable[3], ToggledTable[4], ToggledTable[5], ToggledTable[6]); usedToggle = true;"
style="margin: 6px 5px 0"
value="togglerpb"
aria-label="Toggle r statistically value for filtering"
checked
/>
<p
class="form-check-label"
for="togglerpb"
style="padding-left: 20px; font-weight: 10"
>
Toggle r<sub>pb</sub>
</p>
</li>
<li class="form-check">
<input
class="form-check-input"
type="checkbox"
id="toggleeFP"
onclick="toggleTableCol('coleFP', document.getElementById('toggleeFP').checked); RememberToggleOptions(ToggledTable[0], ToggledTable[1], ToggledTable[2],document.getElementById('toggleeFP').checked, ToggledTable[4], ToggledTable[5], ToggledTable[6]); usedToggle = true;"
style="margin: 6px 5px 0"
value="toggleeFP"
aria-label="Toggle eFP images for filtering"
checked
/>
<p
class="form-check-label"
for="toggleeFP"
style="padding-left: 20px; font-weight: 10"
>
Toggle eFP
</p>
</li>
<li class="form-check">
<input
class="form-check-input"
type="checkbox"
id="toggleRPKM"
onclick="toggleTableCol('colRPKM', document.getElementById('toggleRPKM').checked); RememberToggleOptions(ToggledTable[0], ToggledTable[1], ToggledTable[2], ToggledTable[3], document.getElementById('toggleRPKM').checked, ToggledTable[5], ToggledTable[6]); usedToggle = true;"
style="margin: 6px 5px 0"
value="toggleRPKM"
aria-label="Toggle RPKM for filtering"
checked
/>
<p
class="form-check-label"
for="toggleRPKM"
style="padding-left: 20px; font-weight: 10"
>
Toggle RPKM
</p>
</li>
<li class="form-check">
<input
class="form-check-input"
type="checkbox"
id="toggleDetails"
onclick="toggleTableCol('colDetails', document.getElementById('toggleDetails').checked); RememberToggleOptions(ToggledTable[0], ToggledTable[1], ToggledTable[2], ToggledTable[3], ToggledTable[4], document.getElementById('toggleDetails').checked, ToggledTable[6]); usedToggle = true;"
style="margin: 6px 5px 0"
value="toggleDetails"
aria-label="Toggle details for filtering"
checked
/>
<p
class="form-check-label"
for="toggleDetails"
style="padding-left: 20px; font-weight: 10"
>
Toggle Details
</p>
</li>
<li class="form-check">
<input
class="form-check-input"
type="checkbox"
id="toggleCompare"
onclick="toggleTableCol('colCompare', document.getElementById('toggleCompare').checked); RememberToggleOptions(ToggledTable[0], ToggledTable[1], ToggledTable[2], ToggledTable[3], ToggledTable[4], ToggledTable[5], document.getElementById('toggleCompare').checked); usedToggle = true;"
style="margin: 6px 5px 0"
value="toggleCompare"
aria-label="Toggle compare gene variants for filtering"
/>
<p
class="form-check-label"
for="toggleCompare"
style="padding-left: 20px; font-weight: 10"
>
Toggle Compare Gene Variants
</p>
</li>
</div>
<!-- Filter eFP content -->
<div
class="tab-pane fade PnCPolicy"
id="eFPFilter"
role="tabpanel"
aria-labelledby="eFPFilter-tab"
>
<nav class="navScroll" id="filtereFPList"></nav>
</div>
</div>
</div>
</ul>
</div>
</div>
<script>
let filter1 = "flt2_theTable";
let filter2 = "flt4_theTable";
/**
* Checks if input argument is a number or not
* @param {String | Number} n Input being checked
* @return {Boolean} True if number, false elsewords
*/
function checkNum(n) {
let test = parseFloat(document.getElementById(n).value);
if (isNaN(test)) {
return false;
} else {
return true;
}
}
function filter_num(filter_id1, filter_id2) {
if (
document.getElementById(filter_id1).value.includes("<=") == false &&
document.getElementById(filter_id1).value.includes(">") == false &&
document.getElementById(filter_id1).value.includes("<") == false &&
document.getElementById(filter_id1).value.includes(">=") == false &&
(document.getElementById(filter_id1).value == "") == false &&
checkNum(filter_id1) == true
) {
document.getElementById(filter_id1).value =
">=" + document.getElementById(filter_id1).value;
}
if (
document.getElementById(filter_id2).value.includes("<=") == false &&
document.getElementById(filter_id2).value.includes(">") == false &&
document.getElementById(filter_id2).value.includes("<") == false &&
document.getElementById(filter_id2).value.includes(">=") == false &&
(document.getElementById(filter_id2).value == "") == false &&
checkNum(filter_id2) == true
) {
document.getElementById(filter_id2).value =
">=" + document.getElementById(filter_id2).value;
}
}
</script>
</div>
</div>
<!-- Privacy and Cookies -->
<div id="PrivacyAndCookies" class="PnC" hidden>
<div class="container-fluid">
<div class="row">
<div id="PnCText" class="col-10 PnCText">
The eFP-Seq Browser uses cookies to improve your experience with our tool.
<a
data-toggle="modal"
data-target="#PnCModal"
id="openPnCLearnMore"
style="cursor: help; color: #0673e8"
onclick="DetectBrowser(); $('#PnCModal').modal('toggle');"
>Click here to learn more</a
>
</div>
<div id="PnCClose" class="col-2 PnCClose">
<button class="btn btn-success" style="font-size: 1em" onclick="PnCDisappear()">Close</button>
</div>
</div>
</div>
</div>
<!-- Modals -->
<!-- Help modal -->
<div
id="myModal"
class="modal fade"
tabindex="-1"
role="dialog"
aria-labelledby="myLargeModalLabel"
style="z-index: 5000"
>
<div
class="modal-dialog modal-lg"
style="width: 940px; max-width: 90%; margin-left: auto; margin-right: auto"
>
<div class="modal-content">
<div class="modal-header">
<button type="button" class="btn-close" data-bs-dismiss="modal" aria-label="Close"></button>
</div>
<div class="modal-body">
<!-- Intro -->
<div id="accordion" class="accordion" style="font-size: 1.2em">
Welcome to the eFP-Seq Browser! Click on any of the following collapsing cards to learn more
about how the eFP-Seq Browser works and how you can use it.
<!-- About card -->
<div class="card accordion-item about">
<div class="accordion-header" id="about">
<p class="mb-0">
<button
id="aboutCardTitle"
class="accordion-button collapsed cardTitle"
type="button"
data-bs-toggle="collapse"
data-bs-target="#aboutCard"
aria-expanded="true"
aria-controls="aboutCard"
>
About the eFP-Seq Browser
</button>
</p>
</div>
<div
id="aboutCard"
class="accordion-collapse collapse"